No. | Hit taxon | ANI (%) | ANI coverage (%) | 16S (%) | recA (%) | rplC (%) | Taxonomy |
---|---|---|---|---|---|---|---|
1 | Pasteurella multocida subsp. multocida | 98.7985 | 94.1554 | 99.86 | 98.78 | 99.52 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Pasteurella;Pasteurella multocida;Pasteurella multocida subsp. multocida; |
2 | Pasteurella multocida subsp. gallicida | 98.7516 | 92.5998 | 99.93 | 98.4 | 99.68 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Pasteurella;Pasteurella multocida;Pasteurella multocida subsp. gallicida; |
3 | Pasteurella multocida subsp. septica | 96.7774 | 92.8136 | 98.57 | 98.59 | 99.21 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Pasteurella;Pasteurella multocida;Pasteurella multocida subsp. septica; |
4 | Pasteurella stomatis | 98.09 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Pasteurella;Pasteurella stomatis; | ||||
5 | Pasteurella dagmatis | 84.5912 | 25.4649 | 97.47 | 86.28 | 97.3 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Pasteurella;Pasteurella dagmatis; |
6 | Pasteurella canis | 84.304 | 28.1089 | 97.4 | 84.87 | 96.67 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Pasteurella;Pasteurella canis; |
7 | Haemophilus felis | 85.3553 | 8.1131 | 96.42 | 81.08 | 95.08 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Haemophilus_g2;Haemophilus felis; |
8 | CP035368_s | 85.6955 | 6.8251 | 94.1 | 81.19 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Haemophilus;CP035368_s; | |
9 | KV820352_s | 84.6473 | 6.6375 | 93.98 | 82.93 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Haemophilus;KV820352_s; | |
10 | Actinobacillus suis | 84.7874 | 3.7316 | 93.64 | 94.13 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Actinobacillus;Actinobacillus suis; | |
11 | Actinobacillus equuli subsp. equuli | 85.1739 | 3.3967 | 93.47 | 93.81 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Actinobacillus;Actinobacillus equuli;Actinobacillus equuli subsp. equuli; | |
12 | Actinobacillus ureae | 85.1262 | 3.4337 | 93.3 | 94.13 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Actinobacillus;Actinobacillus ureae; | |
13 | Volucribacter psittacicida | 85.0926 | 3.8385 | 92.87 | 94.13 | Bacteria;;;Proteobacteria;;Gammaproteobacteria;;Pasteurellales;;Pasteurellaceae;;Volucribacter;Volucribacter psittacicida; |
Index | Decision | Drug class | Mechanism | AMR Gene Family | ARO (Best hit) | ARO ID | Bitscore/Cutoff | Identity (%) | SNP | Predicted DNA | Predicted Protein |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | Strict | elfamycin antibiotic | antibiotic target alteration | elfamycin resistant EF-Tu | Escherichia coli EF-Tu mutants conferring resistance to Pulvomycin | 3003369 | 715.687/700.0 | 92.62 | R234F | ||
2 | Strict | elfamycin antibiotic | antibiotic target alteration | elfamycin resistant EF-Tu | Escherichia coli EF-Tu mutants conferring resistance to Pulvomycin | 3003369 | 715.687/700.0 | 92.62 | R234F | ||
3 | Strict | penam; cephamycin; cephalosporin; monobactam; carbapenem | antibiotic target alteration | Penicillin-binding protein mutations conferring resistance to beta-lactam antibiotics | Haemophilus influenzae PBP3 conferring resistance to beta-lactam antibiotics | 3004446 | 873.618/500.0 | 70.33 | D350N, S357N |
Index | Ref ID | Contig | Location | Description | E-value | % Identity | % Coverage | Predicted DNA | Predicted Protein |
---|---|---|---|---|---|---|---|---|---|
1 | VFG013254 | 1 | complement(109247..110197) | (gb|NP_438368) (msbB) lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 5.0E-156 | 74.02 | 93.38 | ||
2 | VFG039536 | 1 | complement(260469..261209) | (gb|NP_820549) (CBU_1566) Coxiella Dot/Icm type IVB secretion system translocated effector [T4SS effectors (CVF803)] [Coxiella burnetii RSA 493] | 9.0E-25 | 66.75 | 54.93 | ||
3 | VFG000431 | 1 | 293174..294448 | (gb|NP_458740) (tviB) Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase TviB [Vi antigen (VF0101)] [Salmonella enterica subsp. enterica serovar Typhi str. CT18] | 2.0E-74 | 66.11 | 80.08 | ||
4 | VFG001301 | 1 | 298084..299118 | (gb|NP_644943) (cap8E) capsular polysaccharide synthesis enzyme Cap8E [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] | 3.0E-96 | 72.33 | 63.67 | ||
5 | VFG001374 | 1 | 298084..299118 | (gb|NP_344891) (cps4J) capsular polysaccharide biosynthesis protein Cps4J [Capsule (VF0144)] [Streptococcus pneumoniae TIGR4] | 4.0E-63 | 67.82 | 64.93 | ||
6 | VFG001303 | 1 | 300255..301385 | (gb|NP_644945) (cap8G) capsular polysaccharide synthesis enzyme Cap8G [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] | 1.0E-30 | 64.25 | 78.34 | ||
7 | VFG013368 | 1 | complement(322339..323376) | (gb|NP_439034) (rffG) dTDP-glucose 46-dehydratase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 3.0E-96 | 74.31 | 52.12 | ||
8 | VFG018241 | 1 | complement(353251..353757) | (gb|NP_230208) (luxS) S-ribosylhomocysteinase [AI-2 (VF0406)] [Vibrio cholerae O1 biovar El Tor str. N16961] | 2.0E-56 | 72.63 | 76.92 | ||
9 | VFG013327 | 1 | 375412..377067 | (gb|NP_438900) (yhxB/manB) phosphomannomutase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 0.0 | 79.68 | 99.03 | ||
10 | VFG001855 | 1 | 412491..414134 | (gb|YP_094724) (htpB) Hsp60, 60K heat shock protein HtpB [Hsp60 (VF0159)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] | 0.0 | 72.15 | 98.36 | ||
11 | VFG013471 | 1 | complement(445124..446137) | (gb|NP_439724) (lgtA) N-acetylglucosamine glycosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 2.0E-46 | 66.93 | 63.21 | ||
12 | VFG013265 | 1 | 567699..568307 | (gb|NP_438428) (orfM) deoxyribonucleotide triphosphate pyrophosphatase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 4.0E-123 | 76.77 | 97.04 | ||
13 | VFG045346 | 1 | 638856..639683 | (gb|NP_933683) (IlpA) immunogenic lipoprotein A [IlpA (VF0513)] [Vibrio vulnificus YJ016] | 3.0E-25 | 64.16 | 86.59 | ||
14 | VFG000332 | 1 | 682996..683928 | (gb|NP_439271) (rfaD) ADP-L-glycero-D-mannoheptose-6-epimerase [LOS (VF0044)] [Haemophilus influenzae Rd KW20] | 0.0 | 80.81 | 100.0 | ||
15 | VFG013315 | 1 | complement(718324..719088) | (gb|NP_438813) (lgtF) beta-1,4-glucosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 1.0E-124 | 73.91 | 96.99 | ||
16 | VFG000330 | 1 | 719171..720454 | (gb|NP_438812) (kdtA) 3-deoxy-d-manno-octulosonic-acid transferase [LOS (VF0044)] [Haemophilus influenzae Rd KW20] | 3.0E-90 | 67.32 | 90.42 | ||
17 | VFG013271 | 1 | complement(720965..721687) | (gb|NP_438429) (kdkA) 3-deoxy-D-manno-octulosonic-acid kinase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 5.0E-40 | 66.45 | 83.96 | ||
18 | VFG013276 | 1 | 721775..722821 | (gb|NP_438430) (opsX/rfaC) heptosyltransferase I [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 3.0E-121 | 69.57 | 95.42 | ||
19 | VFG013299 | 1 | 730028..731074 | (gb|NP_438681) (waaQ) heptosyltransferase-like protein [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 1.0E-69 | 66.63 | 91.98 | ||
20 | VFG013346 | 1 | complement(734677..735564) | (gb|NP_438972) (galU) glucosephosphate uridylyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 0.0 | 79.53 | 96.28 | ||
21 | VFG006717 | 1 | complement(972736..975363) | (gb|NP_465159) (lap) Listeria adhesion protein Lap [Lap (VF0444)] [Listeria monocytogenes EGD-e] | 3.0E-132 | 66.03 | 74.7 | ||
22 | VFG013400 | 1 | complement(1194081..1195127) | (gb|NP_439262) (rfaF) ADP-heptose-LPS heptosyltransferase II [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 0.0 | 76.95 | 97.42 | ||
23 | VFG000077 | 1 | 1307855..1308436 | (gb|NP_465991) (clpP) ATP-dependent Clp protease proteolytic subunit [ClpP (VF0074)] [Listeria monocytogenes EGD-e] | 2.0E-44 | 68.03 | 95.53 | ||
24 | VFG013374 | 1 | 1331486..1332514 | (gb|NP_439075) (lpxD) UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 0.0 | 77.8 | 97.67 | ||
25 | VFG013390 | 1 | 1333095..1333883 | (gb|NP_439219) (lpxA) UDP-N-acetylglucosamine acyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 3.0E-132 | 73.13 | 100.0 | ||
26 | VFG013384 | 1 | 1333959..1335137 | (gb|NP_439218) (lpxB) lipid-A-disaccharide synthase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 0.0 | 73.75 | 96.69 | ||
27 | VFG001856 | 1 | 1357836..1358576 | (gb|YP_094893) (ccmC) cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE [CcmC (VF0292)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] | 3.0E-37 | 68.06 | 60.86 | ||
28 | VFG037028 | 1 | 1380510..1381964 | (gb|NP_273273) (katA) catalase [KatA (VF0454)] [Neisseria meningitidis MC58] | 7.0E-68 | 66.63 | 61.99 | ||
29 | VFG013321 | 1 | complement(1486596..1487315) | (gb|NP_438894) (lpxH) UDP-2,3-diacylglucosamine pyrophosphohydrolase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 3.0E-69 | 71.51 | 73.19 | ||
30 | VFG013418 | 1 | 1506775..1507386 | (gb|NP_439337) (gmhA/lpcA) phosphoheptose isomerase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 3.0E-175 | 85.5 | 86.76 | ||
31 | VFG013412 | 1 | 1533755..1534672 | (gb|NP_439302) (lpxC) UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 0.0 | 81.65 | 100.0 | ||
32 | VFG013424 | 1 | complement(1567868..1568539) | (gb|NP_439432) (neuA) acylneuraminate cytidylyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 1.0E-67 | 69.37 | 93.15 | ||
33 | VFG013286 | 1 | complement(1686852..1687868) | (gb|NP_438515) (galE) UDP-glucose 4-epimerase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 0.0 | 78.27 | 100.0 | ||
34 | VFG013436 | 1 | complement(1742640..1743581) | (gb|NP_439676) (htrB) lipid A biosynthesis lauroyl acyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 3.0E-152 | 73.09 | 98.41 | ||
35 | VFG000331 | 1 | 1743805..1745235 | (gb|NP_439675) (rfaE) ADP-heptose synthase [LOS (VF0044)] [Haemophilus influenzae Rd KW20] | 0.0 | 77.37 | 99.65 | ||
36 | VFG013248 | 1 | 1770565..1772313 | (gb|NP_438233) (msbA) lipid transporter ATP-binding/permease [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 0.0 | 74.09 | 99.09 | ||
37 | VFG013242 | 1 | 1772345..1773322 | (gb|NP_438232) (lpxK) tetraacyldisaccharide 4'-kinase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 4.0E-106 | 70.91 | 83.44 | ||
38 | VFG013236 | 1 | 1773518..1774294 | (gb|NP_438231) (kdsB) 3-deoxy-manno-octulosonate cytidylyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 8.0E-102 | 71.05 | 97.81 | ||
39 | VFG000335 | 1 | 1854854..1855903 | (gb|NP_439322) (ompP5) outer membrane protein P5 (ompA), human factor H binding protein [P5 protein (VF0041)] [Haemophilus influenzae Rd KW20] | 9.0E-109 | 68.4 | 100.0 | ||
40 | VFG000696 | 1 | complement(1858260..1858919) | (gb|AAP42188) (bexA) ATP-dependent polysaccharide export protein BexA [Capsule (VF0043)] [Haemophilus influenzae str. 1007] | 7.0E-95 | 73.25 | 88.79 | ||
41 | VFG000258 | 1 | complement(1858260..1858919) | (gb|NP_273138) (ctrD) capsule polysaccharide export ATP-binding protein CtrD [Capsule (VF0079)] [Neisseria meningitidis MC58] | 3.0E-80 | 73.06 | 81.21 | ||
42 | VFG000257 | 1 | complement(1858916..1859713) | (gb|NP_273137) (ctrC) capsule polysaccharide export inner-membrane protein CtrC [Capsule (VF0079)] [Neisseria meningitidis MC58] | 1.0E-60 | 68.25 | 84.09 | ||
43 | VFG000697 | 1 | complement(1858916..1859713) | (gb|AAP42189) (bexB) capsular polysaccharide export ABC transporter transmembrane protein BexB [Capsule (VF0043)] [Haemophilus influenzae str. 1007] | 3.0E-57 | 67.39 | 86.84 | ||
44 | VFG000698 | 1 | complement(1859713..1860849) | (gb|AAP42190) (bexC) capsular polysaccharide export protein BexC [Capsule (VF0043)] [Haemophilus influenzae str. 1007] | 8.0E-91 | 67.68 | 88.65 | ||
45 | VFG000256 | 1 | complement(1859713..1860849) | (gb|NP_273136) (ctrB) capsule polysaccharide export inner-membrane protein CtrB [Capsule (VF0079)] [Neisseria meningitidis MC58] | 1.0E-18 | 64.02 | 53.74 | ||
46 | VFG000699 | 1 | complement(1860859..1862040) | (gb|AAP42191) (bexD) capsular polysaccharide export protein BexD [Capsule (VF0043)] [Haemophilus influenzae str. 1007] | 1.0E-56 | 67.76 | 54.06 | ||
47 | VFG000963 | 1 | complement(1863485..1864657) | (gb|NP_270108) (hasB) UDP-glucose 6-dehydrogenase [Hyaluronic acid capsule (VF0244)] [Streptococcus pyogenes M1 GAS] | 2.0E-35 | 64.37 | 70.59 | ||
48 | VFG000704 | 1 | 1869875..1871965 | (gb|AAP42196) (hscA) capsular polysaccharide export protein HscA [Capsule (VF0043)] [Haemophilus influenzae str. 1007] | 2.0E-71 | 65.15 | 70.21 | ||
49 | VFG000705 | 1 | 1871975..1873201 | (gb|AAP42197) (hscB) capsular polysaccharide export protein HscB [Capsule (VF0043)] [Haemophilus influenzae str. 1007] | 1.0E-70 | 65.73 | 92.26 | ||
50 | VFG013465 | 1 | complement(2201272..2202126) | (gb|NP_439706) (kdsA) 2-dehydro-3-deoxyphosphooctonate aldolase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 0.0 | 78.71 | 100.0 | ||
51 | VFG013482 | 1 | complement(2260725..2261525) | (gb|NP_439837) (lsgF) glycosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 2.0E-104 | 72.18 | 89.76 | ||
52 | VFG013487 | 1 | complement(2261525..2262409) | (gb|NP_439838) (lsgE) glycosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 8.0E-71 | 68.06 | 86.33 | ||
53 | VFG013491 | 1 | complement(2263606..2264391) | (gb|NP_439839) (lsgD) glycosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 7.0E-52 | 67.12 | 93.13 | ||
54 | VFG013503 | 1 | complement(2265321..2266520) | (gb|NP_439842) (lsgA) lipopolysaccharide biosynthesis transporter [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 4.0E-89 | 67.03 | 90.25 | ||
55 | VFG013352 | 1 | complement(2265321..2266520) | (gb|NP_439027) (HI0867) lipopolysaccharide biosynthesis protein [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 1.0E-82 | 67.28 | 89.17 | ||
56 | VFG013508 | 1 | complement(2328983..2330056) | (gb|NP_439858) (wecA) undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20] | 0.0 | 75.86 | 97.58 |
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