TrueBac™ ID

Sample name

Decision

Genome size 2,832,804
No. of contigs 1
GC content 32.82 %
N50 2,832,804
DB ver. 20191105
Pipeline ver. 1.92
Sequencing depth N/A
No. of UBCG (paralogs) 92/92 (0)

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ID results

Sequence file(s)

Staphylococcus aureus FDAARGOS_34 is identified as Staphylococcus aureus subsp. aureus by genomic evidence.

No.	Hit taxon	ANI (%)	ANI coverage (%)	16S (%)	recA (%)	rplC (%)	Taxonomy
1	Staphylococcus aureus subsp. aureus	98.9308	97.8419	99.8	99.9	99.85	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus aureus;Staphylococcus aureus subsp. aureus;
2	Staphylococcus aureus subsp. anaerobius	97.8811	89.4948	99.86	99.52	99.1	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus aureus;Staphylococcus aureus subsp. anaerobius;
3	Staphylococcus argenteus	89.2014	85.47	99.93	89.46	99.1	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus argenteus;
4	Staphylococcus schweitzeri	90.2977	86.3361	99.86	89.37	98.49	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus schweitzeri;
5	Staphylococcus simiae	85.3095	29.1321	99.32	86.21	94.87	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus simiae;
6	Staphylococcus capitis subsp. capitis	84.8976	14.6205	98.64		90.2	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus capitis;Staphylococcus capitis subsp. capitis;
7	Staphylococcus petrasii subsp. pragensis	84.7692	13.4725	98.64	85.09		Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus petrasii;Staphylococcus petrasii subsp. pragensis;
8	Staphylococcus caprae	84.7974	13.7612	98.57		91.86	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus caprae;
9	Staphylococcus petrasii subsp. croceilyticus	84.7319	12.4267	98.57	85.47		Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus petrasii;Staphylococcus petrasii subsp. croceilyticus;
10	Staphylococcus haemolyticus	84.8687	11.4122	98.37		90.5	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus haemolyticus;
11	CP022881_s	84.907	16.71	98.3	85.37	89.73	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;CP022881_s;
12	Staphylococcus warneri	84.7226	16.0189	98.23		89.88	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus warneri;
13	Staphylococcus hominis subsp. hominis	84.8514	11.8085	97.96	85.28		Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus hominis;Staphylococcus hominis subsp. hominis;
14	Lactobacillus similis	97.5429	5.3573	85.11			Bacteria;;;Firmicutes;;Bacilli;;Lactobacillales;;Lactobacillaceae;;Lactobacillus;Lactobacillus similis;

Index	Decision	Drug class	Mechanism	AMR Gene Family	ARO (Best hit)	ARO ID	Bitscore/Cutoff	Identity (%)
1	Strict	glycylcycline; tetracycline antibiotic	antibiotic efflux	multidrug and toxic compound extrusion (MATE) transporter	mepA	3000026	881.708/850.0	99.78
2	Strict		antibiotic efflux	ATP-binding cassette (ABC) antibiotic efflux pump	sav1866	3000489	1170.61/1120.0	99.83
3	Strict	acridine dye; fluoroquinolone antibiotic	antibiotic efflux	major facilitator superfamily (MFS) antibiotic efflux pump	arlS	3000839	909.827/880.0	99.78
4	Perfect	acridine dye; fluoroquinolone antibiotic	antibiotic efflux	major facilitator superfamily (MFS) antibiotic efflux pump	arlR	3000838	442.58/410.0	100.0
5	Perfect	acridine dye; cephalosporin; peptide antibiotic; penam; fluoroquinolone antibiotic; tetracycline antibiotic	antibiotic efflux	ATP-binding cassette (ABC) antibiotic efflux pump; major facilitator superfamily (MFS) antibiotic efflux pump	mgrA	3000815	301.212/270.0	100.0
6	Strict	tetracycline antibiotic	antibiotic efflux	major facilitator superfamily (MFS) antibiotic efflux pump	tet(38)	3000565	871.692/850.0	99.78
7	Perfect	glycylcycline; tetracycline antibiotic	antibiotic efflux	multidrug and toxic compound extrusion (MATE) transporter	mepR	3000746	285.804/250.0	100.0

Index	Ref ID	Contig	Location	Description	E-value	% Identity	% Coverage
1	VFG001273	1	87661..88596	(gb\|NP_647159) (hlgA) gamma-hemolysin chain II precursor [-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2]	2.0E-160	73.46	98.72
2	VFG001277	1	87661..88596	(gb\|NP_646196) (lukS-PV) Panton-Valentine leukocidin chain S precursor [PVL (VF0018)] [Staphylococcus aureus subsp. aureus MW2]	5.0E-149	72.6	99.79
3	VFG001274	1	87661..88596	(gb\|NP_647160) (hlgC) gamma-hemolysin component C [-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2]	1.0E-125	70.75	99.79
4	VFG001276	1	88598..89581	(gb\|NP_646195) (lukF-PV) Panton-Valentine leukocidin chain F precursor [PVL (VF0018)] [Staphylococcus aureus subsp. aureus MW2]	0.0	82.27	98.48
5	VFG001275	1	88598..89581	(gb\|NP_647161) (hlgB) gamma-hemolysin component B [-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2]	0.0	76.77	98.48
6	VFG001315	1	complement(105018..107555)	(gb\|NP_646946) (hysA) hyaluronate lyase precursor [Hyaluronate lyase (VF0013)] [Staphylococcus aureus subsp. aureus MW2]	0.0	87.11	95.15
7	VFG048830	1	404947..406353	(gb\|YP_002920353.1) (gnd) 6-phosphogluconate dehydrogenase [Capsule (VF0560)] [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]	1.0E-63	65.52	74.41
8	VFG001278	1	437583..439043	(gb\|NP_646186) (ebp) cell surface elastin binding protein [EbpS (VF0008)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.93	100.0
9	VFG037028	1	complement(623590..625107)	(gb\|NP_273273) (katA) catalase [KatA (VF0454)] [Neisseria meningitidis MC58]	3.0E-97	68.78	59.82
10	VFG011430	1	complement(751837..752070)	(gb\|NP_540392) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]	8.0E-13	68.09	80.34
11	VFG001293	1	826689..827648	(gb\|NP_645861) (hly/hla) Alpha-Hemolysin precursor [-hemolysin (VF0001)] [Staphylococcus aureus subsp. aureus MW2]	0.0	100.0	100.0
12	VFG001324	1	complement(853847..854170)	(gb\|YP_001332081) (isdG) iron-regulated surface determinant protein G [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman]	3.0E-165	99.38	100.0
13	VFG001323	1	complement(854189..854923)	(gb\|NP_645834) (srtB) NPQTN specific sortase B [Isd (VF0015)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.32	100.0
14	VFG001322	1	complement(854985..855953)	(gb\|NP_645833) (isdF) iron-regulated surface determinant protein F, ATP-binding-cassette-type transmembrane transporter [Isd (VF0015)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.59	99.69
15	VFG001321	1	complement(855963..856841)	(gb\|YP_001332078) (isdE) iron-regulated surface determinant protein E [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman]	0.0	99.77	100.0
16	VFG001320	1	complement(856838..857914)	(gb\|NP_645831) (isdD) iron-regulated surface determinant protein D [Isd (VF0015)] [Staphylococcus aureus subsp. aureus MW2]	0.0	98.79	100.0
17	VFG001319	1	complement(857914..858597)	(gb\|YP_001332076) (isdC) iron-regulated surface determinant protein C [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman]	0.0	99.56	100.0
18	VFG001318	1	858806..859858	(gb\|YP_001332075) (isdA) iron-regulated surface determinant protein A [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman]	0.0	99.72	100.0
19	VFG001317	1	860061..861995	(gb\|YP_001332074) (isdB) iron-regulated surface determinant protein B, haemoglobin receptor [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman]	0.0	98.86	100.0
20	VFG001296	1	945336..946346	(gb\|NP_645749) (sspA) serine protease; V8 protease; glutamyl endopeptidase [V8 protease (VF0023)] [Staphylococcus aureus subsp. aureus MW2]	0.0	96.83	100.0
21	VFG001295	1	946428..947609	(gb\|NP_645748) (sspB) staphopain cysteine proteinase SspB [Staphopain (VF0006)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.83	100.0
22	VFG001294	1	947647..947976	(gb\|NP_645747) (sspC) Staphostatin B [Staphopain (VF0006)] [Staphylococcus aureus subsp. aureus MW2]	1.0E-169	99.7	100.0
23	VFG002418	1	complement(1107154..1108653)	(gb\|YP_001331791) (vWbp) secreted von Willebrand factor-binding protein precursor [vWbp (VF0420)] [Staphylococcus aureus subsp. aureus str. Newman]	0.0	77.32	100.0
24	VFG001289	1	complement(1108874..1111711)	(gb\|NP_645581) (clfA) Clumping factor A, fibrinogen-binding protein [Clumping factor (VF0004)] [Staphylococcus aureus subsp. aureus MW2]	0.0	93.7	100.0
25	VFG000077	1	complement(1131768..1132355)	(gb\|NP_465991) (clpP) ATP-dependent Clp protease proteolytic subunit [ClpP (VF0074)] [Listeria monocytogenes EGD-e]	2.0E-127	78.01	95.75
26	VFG001359	1	1278404..1279333	(gb\|NP_346089) (psaA) manganese ABC transporter, manganese-binding adhesion liprotein [PsaA (VF0151)] [Streptococcus pneumoniae TIGR4]	3.0E-38	65.33	86.24
27	VFG002165	1	1278404..1279333	(gb\|NP_815739) (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]	3.0E-26	64.88	86.02
28	VFG001281	1	complement(1347532..1351029)	(gb\|NP_645335) (sdrE) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2]	0.0	94.37	100.0
29	VFG001280	1	complement(1351423..1355622)	(gb\|NP_645334) (sdrD) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2]	0.0	93.76	91.79
30	VFG001279	1	complement(1355990..1358818)	(gb\|NP_645333) (sdrC) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2]	0.0	93.24	100.0
31	VFG000079	1	complement(1398888..1401344)	(gb\|NP_463763) (clpC) endopeptidase Clp ATP-binding chain C [ClpC (VF0072)] [Listeria monocytogenes EGD-e]	0.0	71.14	92.14
32	VFG001316	1	complement(1554391..1556466)	(gb\|NP_645114) (geh) glycerol ester hydrolase [Lipase (VF0012)] [Staphylococcus aureus subsp. aureus MW2]	0.0	98.89	100.0
33	VFG002411	1	complement(1590126..1590440)	(gb\|NP_645082) (esxB) type VII secretion system protein secreted protein EsxB [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2]	2.0E-161	99.68	100.0
34	VFG002410	1	complement(1590456..1590848)	(gb\|NP_645081) (esaC) type VII secretion system protein secreted protein EsxC [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.75	100.0
35	VFG002409	1	complement(1590878..1595317)	(gb\|NP_645079) (essC) type VII secretion system protein EssC, FtsK/SpoIIIE family ATPase [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2]	0.0	98.47	100.0
36	VFG002408	1	complement(1595339..1596673)	(gb\|NP_645078) (essB) type VII secretion system protein EssB, monotopic membrane protein [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2]	0.0	96.4	100.0
37	VFG002407	1	complement(1596686..1596928)	(gb\|NP_645076) (esaB) type VII secretion system protein EsaB [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2]	2.0E-102	93.42	100.0
38	VFG002404	1	complement(1596900..1597358)	(gb\|NP_645075) (essA) type VII secretion system protein EssA, monotopic membrane protein [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2]	0.0	100.0	100.0
39	VFG002406	1	complement(1597358..1600387)	(gb\|NP_645074) (esaA) type VII secretion system protein EsaA [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.64	100.0
40	VFG002405	1	complement(1600471..1600764)	(gb\|NP_645073) (esxA) type VII secretion system protein secreted protein EsxA [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2]	1.0E-151	100.0	100.0
41	VFG002419	1	complement(1662805..1664955)	(gb\|NP_645021) (coa) staphylocoagulase precursor [Staphylocoagulase (VF0421)] [Staphylococcus aureus subsp. aureus MW2]	0.0	80.07	87.17
42	VFG001324	1	1745234..1745560	(gb\|YP_001332081) (isdG) iron-regulated surface determinant protein G [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman]	1.0E-31	70.55	94.19
43	VFG001312	1	complement(1745625..1746770)	(gb\|NP_644954) (cap8P) capsular polysaccharide synthesis enzyme Cap8P [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.48	100.0
44	VFG001373	1	complement(1745625..1746770)	(gb\|NP_344890) (cps4I) UDP-N-acetylglucosamine-2-epimerase [Capsule (VF0144)] [Streptococcus pneumoniae TIGR4]	1.0E-32	64.6	69.63
45	VFG001311	1	complement(1746847..1748109)	(gb\|NP_644953) (cap8O) capsular polysaccharide synthesis enzyme Cap8O [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.68	100.0
46	VFG001310	1	complement(1748163..1749050)	(gb\|NP_644952) (cap8N) capsular polysaccharide synthesis enzyme Cap8N [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.21	100.0
47	VFG001309	1	complement(1749050..1749607)	(gb\|NP_644951) (cap8M) capsular polysaccharide synthesis enzyme Cap8M [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.64	100.0
48	VFG001308	1	complement(1749618..1750547)	(gb\|NP_644950) (cap8L) capsular polysaccharide synthesis enzyme Cap8L [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.68	100.0
49	VFG001308	1	complement(1750544..1750810)	(gb\|NP_644950) (cap8L) capsular polysaccharide synthesis enzyme Cap8L [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	3.0E-127	95.0	100.0
50	VFG001303	1	complement(1754932..1756056)	(gb\|NP_644945) (cap8G) capsular polysaccharide synthesis enzyme Cap8G [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.56	100.0
51	VFG001302	1	complement(1756060..1757169)	(gb\|NP_644944) (cap8F) capsular polysaccharide synthesis enzyme Cap8F [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	98.38	100.0
52	VFG001301	1	complement(1757182..1758210)	(gb\|NP_644943) (cap8E) capsular polysaccharide synthesis enzyme Cap8E [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.22	100.0
53	VFG001374	1	complement(1757182..1758210)	(gb\|NP_344891) (cps4J) capsular polysaccharide biosynthesis protein Cps4J [Capsule (VF0144)] [Streptococcus pneumoniae TIGR4]	6.0E-48	66.0	79.98
54	VFG001300	1	complement(1758200..1760023)	(gb\|NP_644942) (cap8D) capsular polysaccharide synthesis enzyme Cap8D [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.89	100.0
55	VFG001299	1	complement(1760043..1760807)	(gb\|NP_644941) (cap8C) capsular polysaccharide synthesis enzyme Cap8C [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.61	100.0
56	VFG001298	1	complement(1760810..1761496)	(gb\|NP_644940) (cap8B) capsular polysaccharide synthesis enzyme Cap8B [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	98.54	100.0
57	VFG001297	1	complement(1761512..1762180)	(gb\|NP_644939) (cap8A) capsular polysaccharide synthesis enzyme [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.81	77.28
58	VFG006717	1	complement(1762525..1765134)	(gb\|NP_465159) (lap) Listeria adhesion protein Lap [Lap (VF0444)] [Listeria monocytogenes EGD-e]	0.0	67.81	96.17
59	VFG001313	1	1806048..1807550	(gb\|NP_644899) (spa) Immunoglobulin G binding protein A precursor [SpA (VF0017)] [Staphylococcus aureus subsp. aureus MW2]	0.0	97.67	100.0
60	VFG002420	1	complement(1923343..1925661)	(gb\|NP_644838) (adsA) Adenosine synthase A [AdsA (VF0422)] [Staphylococcus aureus subsp. aureus MW2]	0.0	96.64	100.0
61	VFG004773	1	1995948..1997993	(gb\|NP_647407) (lip) triacylglycerol lipase precursor [Lipase (CVF091)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.41	100.0
62	VFG001288	1	complement(1998441..1999493)	(gb\|NP_647406) (icaC) intercellular adhesion protein C, involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.15	100.0
63	VFG001287	1	complement(1999480..2000352)	(gb\|NP_647405) (icaB) N-deacetylase, involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.77	100.0
64	VFG001286	1	complement(2000349..2000654)	(gb\|NP_647404) (icaD) intercellular adhesion protein D, involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2]	1.0E-156	99.67	100.0
65	VFG001285	1	complement(2000618..2001856)	(gb\|NP_647403) (icaA) N-acetylglucosaminyltransferase, involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.52	100.0
66	VFG001284	1	2002020..2002580	(gb\|NP_647402) (icaR) ica operon transcriptional regulator IcaR [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.82	100.0
67	VFG001298	1	2004108..2004800	(gb\|NP_644940) (cap8B) capsular polysaccharide synthesis enzyme Cap8B [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	3.0E-50	68.97	85.43
68	VFG001299	1	2004797..2005564	(gb\|NP_644941) (cap8C) capsular polysaccharide synthesis enzyme Cap8C [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	3.0E-31	65.91	83.46
69	VFG001314	1	2042839..2044368	(gb\|NP_647375) (aur) zinc metalloproteinase aureolysin [Aureolysin (VF0024)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.61	100.0
70	VFG001290	1	2051441..2054398	(gb\|NP_647368) (clfB) Clumping factor B, adhesin [Clumping factor (VF0004)] [Staphylococcus aureus subsp. aureus MW2]	0.0	92.18	84.58
71	VFG001283	1	2193244..2196333	(gb\|NP_647238) (fnbA) fibronectin-binding protein A [FnBPs (VF0010)] [Staphylococcus aureus subsp. aureus MW2]	0.0	88.07	100.0
72	VFG001282	1	2197014..2199878	(gb\|NP_647237) (fnbB) fibronectin-binding protein B [FnBPs (VF0010)] [Staphylococcus aureus subsp. aureus MW2]	0.0	84.66	100.0
73	VFG001275	1	complement(2281694..2282671)	(gb\|NP_647161) (hlgB) gamma-hemolysin component B [-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.9	100.0
74	VFG001276	1	complement(2281694..2282671)	(gb\|NP_646195) (lukF-PV) Panton-Valentine leukocidin chain F precursor [PVL (VF0018)] [Staphylococcus aureus subsp. aureus MW2]	0.0	76.51	96.83
75	VFG001274	1	complement(2282673..2283620)	(gb\|NP_647160) (hlgC) gamma-hemolysin component C [-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.68	100.0
76	VFG001277	1	complement(2282673..2283620)	(gb\|NP_646196) (lukS-PV) Panton-Valentine leukocidin chain S precursor [PVL (VF0018)] [Staphylococcus aureus subsp. aureus MW2]	0.0	78.53	85.97
77	VFG001273	1	complement(2282673..2283620)	(gb\|NP_647159) (hlgA) gamma-hemolysin chain II precursor [-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2]	2.0E-153	73.33	97.47
78	VFG001273	1	complement(2284187..2285152)	(gb\|NP_647159) (hlgA) gamma-hemolysin chain II precursor [-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.89	96.27
79	VFG001274	1	complement(2284187..2285152)	(gb\|NP_647160) (hlgC) gamma-hemolysin component C [-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2]	3.0E-153	73.33	93.17
80	VFG001277	1	complement(2284187..2285152)	(gb\|NP_646196) (lukS-PV) Panton-Valentine leukocidin chain S precursor [PVL (VF0018)] [Staphylococcus aureus subsp. aureus MW2]	6.0E-136	71.92	94.41
81	VFG002421	1	complement(2285652..2286965)	(gb\|NP_647158) (sbi) IgG-binding protein SBI [Sbi (VF0423)] [Staphylococcus aureus subsp. aureus MW2]	0.0	94.98	100.0
82	VFG000274	1	complement(2415939..2416553)	(gb\|NP_206868) (ureG) urease accessory protein (ureG) [Urease (VF0050)] [Helicobacter pylori 26695]	8.0E-37	66.55	94.63
83	VFG000270	1	complement(2417713..2419428)	(gb\|NP_206872) (ureB) urease beta subunit UreB, urea amidohydrolase [Urease (VF0050)] [Helicobacter pylori 26695]	2.0E-57	64.97	63.29
84	VFG001315	1	complement(2479244..2481691)	(gb\|NP_646946) (hysA) hyaluronate lyase precursor [Hyaluronate lyase (VF0013)] [Staphylococcus aureus subsp. aureus MW2]	0.0	91.74	100.0
85	VFG001312	1	2587755..2588882	(gb\|NP_644954) (cap8P) capsular polysaccharide synthesis enzyme Cap8P [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]	3.0E-71	66.04	93.35
86	VFG001373	1	2587755..2588882	(gb\|NP_344890) (cps4I) UDP-N-acetylglucosamine-2-epimerase [Capsule (VF0144)] [Streptococcus pneumoniae TIGR4]	2.0E-48	66.21	70.83
87	VFG001292	1	2673690..2673824	(gb\|NP_646776) (hld) delta-hemolysin [-hemolysin (VF0007)] [Staphylococcus aureus subsp. aureus MW2]	4.0E-64	99.26	100.0
88	VFG001855	1	2678951..2680567	(gb\|YP_094724) (htpB) Hsp60, 60K heat shock protein HtpB [Hsp60 (VF0159)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]	4.0E-96	66.67	88.5
89	VFG001798	1	complement(2704045..2704869)	(gb\|YP_186826) (hlb) beta-hemolysin [-hemolysin (VF0002)] [Staphylococcus aureus subsp. aureus COL]	0.0	99.64	99.88
90	VFG000674	1	complement(2704045..2704869)	(gb\|CAA70683) (smcL) sphingomyelinase-c [SMase (VF0061)] [Listeria ivanovii str. ATCC 19119]	7.0E-33	67.47	59.76
91	VFG001328	1	2744785..2745276	(gb\|NP_646702) (sak) Staphylokinase precursor [Staphylokinase (VF0021)] [Staphylococcus aureus subsp. aureus MW2]	0.0	99.59	100.0
92	VFG002423	1	2746773..2747123	(gb\|YP_001332910) (scn) complement inhibitor SCIN [SCIN (VF0425)] [Staphylococcus aureus subsp. aureus str. Newman]	0.0	99.72	100.0
93	VFG001798	1	complement(2748298..2748498)	(gb\|YP_186826) (hlb) beta-hemolysin [-hemolysin (VF0002)] [Staphylococcus aureus subsp. aureus COL]	1.0E-91	100.0	91.04
94	VFG001799	1	2748884..2750947	(gb\|CAB94853) (map) extracellular proteins Map [Eap/Map (VF0016)] [Staphylococcus aureus str. Newman D2C (ATCC 25904)]	0.0	94.79	83.43
95	VFG001799	1	2748884..2750947	(gb\|CAB94853) (map) extracellular proteins Map [Eap/Map (VF0016)] [Staphylococcus aureus str. Newman D2C (ATCC 25904)]	0.0	78.61	77.33
96	VFG001799	1	2748884..2750947	(gb\|CAB94853) (map) extracellular proteins Map [Eap/Map (VF0016)] [Staphylococcus aureus str. Newman D2C (ATCC 25904)]	0.0	73.6	60.85
97	VFG001799	1	2748884..2750947	(gb\|CAB94853) (map) extracellular proteins Map [Eap/Map (VF0016)] [Staphylococcus aureus str. Newman D2C (ATCC 25904)]	3.0E-99	67.44	60.61

How to cite

Ha, S.M., Kim, C.K., Roh, J., Byun, J.H., Yang, S.J., Choi, S.B., Chun, J., and Yong, D. (2019). Application of the whole genome-based bacterial identification system, TrueBac ID, in clinical isolates which were not identified with three MALDI-TOF M/S systems. Ann Lab Med. 39(6):530-536.

Feldgarden, M., Brover, V., Haft, D.H., Prasad, A.B., Slotta, D.J., Tolstoy, I., Tyson, G.H., Zhao, S., Hsu, C.-H., McDermott, P.F., Tadesse, D.A., Morales, C., Simmons, M., Tillman, G., Wasilenko, J., Folster, J.P., and Klimke, W. (2019). Validating the NCBI AMRFinder Tool and Resistance Gene Database Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of NARMS Isolates.Antimicrob. Agents Chemother. 63 no. 11 (November 1, 2019): e00483-19.

Liu, B., Zheng, DD., Jin, Q., Chen, LH., and Yang, J. (2019). VFDB 2019: a comparative pathogenomic platform with an interactive web interface.Nucleic Acids Res. 47(D1):D687-D692.