TrueBac™ ID

TrueBac™ ID - Genome Result

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Decision

Genome size 2598175
Number of contigs 6
GC content 0.3269637341595543
N50 1593980
DB ver. 20181018
Pipeline ver. 1.8
Sequencing depth
Number of UBCG genes 92 / 92

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ID results

Sequence file(s)

Staphylococcus sp. FDAARGOS_39 (GCF_001019115.2) is identified as Staphylococcus warneri by genomic evidence.

Rank	Hit taxon	ANI (%)	ANI coverage (%)	16S (%)	recA (%)	rplC (%)	Taxonomy
1	Staphylococcus warneri	99.496	93.4278	99.93	100.0	80.0	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus warneri;
2	Staphylococcus epidermidis	85.8614	18.2008	98.77	85.29	91.82	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus epidermidis;
3	Staphylococcus capitis subsp. capitis	85.3828	21.0031	98.5	84.62	91.82	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus capitis;Staphylococcus capitis subsp. capitis;
4	Staphylococcus hominis subsp. hominis	85.344	15.497	98.57	85.48	89.43	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus hominis;Staphylococcus hominis subsp. hominis;
5	Staphylococcus kloosii	85.2329	10.1244	98.03	84.33	80.0	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus kloosii;
6	Staphylococcus petrasii subsp. jettensis	85.1224	17.2463	98.51	87.97	90.62	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus petrasii;Staphylococcus petrasii subsp. jettensis;
7	Staphylococcus hominis subsp. novobiosepticus	85.1102	14.5312	98.28		89.58	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus hominis;Staphylococcus hominis subsp. novobiosepticus;
8	Staphylococcus devriesei	85.061	15.6205	98.64	86.72	80.0	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus devriesei;
9	Staphylococcus haemolyticus	85.0115	16.5897	98.44	86.71	90.33	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus haemolyticus;
10	Staphylococcus lugdunensis	84.971	11.0171	98.71	83.54	88.84	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus lugdunensis;
11	Staphylococcus caprae	84.9022	22.2269	98.44	87.18	80.0	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus caprae;
12	Staphylococcus petrasii subsp. petrasii	84.8981	17.3697	98.57	87.77	90.62	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus petrasii;Staphylococcus petrasii subsp. petrasii;
13	Staphylococcus capitis subsp. urealyticus	84.8919	20.282	98.27	85.19	91.52	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus capitis;Staphylococcus capitis subsp. urealyticus;
14	Staphylococcus argenteus	84.7269	16.454	98.24	85.85	89.73	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus argenteus;
15	Staphylococcus simiae	84.7231	17.6062	98.17	85.71	89.73	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus simiae;
16	Staphylococcus aureus subsp. aureus	84.703	15.6539	98.1	84.89	89.73	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus aureus;Staphylococcus aureus subsp. aureus;
17	Staphylococcus petrasii subsp. croceilyticus	84.6026	16.8843	98.3	87.87	80.0	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus petrasii;Staphylococcus petrasii subsp. croceilyticus;
18	Staphylococcus schweitzeri	84.502	16.0699	98.24	85.09	89.58	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus schweitzeri;
19	Staphylococcus saccharolyticus	84.4829	19.0339	98.51	85.0	90.77	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus saccharolyticus;
20	Staphylococcus gallinarum	85.7514	8.9893	98.24	84.15	89.14	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus gallinarum;
21	JUTO_s	85.5058	9.4802	98.17	84.62	80.0	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;JUTO_s;
22	FMPG_s	84.0007	9.632	98.31	84.81	80.0	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;FMPG_s;
23	PIZP_s	83.9574	9.0975	98.37	82.48	80.0	Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;PIZP_s;
24	Staphylococcus petrasii subsp. pragensis			98.3			Bacteria;;;Firmicutes;;Bacilli;;Bacillales;;Staphylococcaceae;;Staphylococcus;Staphylococcus petrasii;Staphylococcus petrasii subsp. pragensis;

Index	Decision	Drug class	Mechanism	AMR Gene Family	ARO (Best hit)	ARO ID	Bitscore/Cutoff	Identity (%)
1	Strict	streptogramin antibiotic; pleuromutilin antibiotic	antibiotic efflux	ATP-binding cassette (ABC) antibiotic efflux pump	vgaALC	3002830	283/1000	97.83
2	Strict	streptogramin antibiotic; pleuromutilin antibiotic	antibiotic efflux	ATP-binding cassette (ABC) antibiotic efflux pump	vgaALC	3002830	297/1000	100.0
3	Strict	peptide antibiotic; tetracycline antibiotic; fluoroquinolone antibiotic; penam; cephalosporin; acridine dye	antibiotic efflux	ATP-binding cassette (ABC) antibiotic efflux pump; major facilitator superfamily (MFS) antibiotic efflux pump	mgrA	3000815	276/270	92.47
4	Strict	streptogramin antibiotic; pleuromutilin antibiotic	antibiotic efflux	ATP-binding cassette (ABC) antibiotic efflux pump	vgaALC	3002830	1037/1000	98.66